Molecular Biology & Evolution<p>New graph-based tool ska lo enables reference-free detection of SNPs, indels, and variant groups from pathogen WGS data. Benchmarking shows high sensitivity, including in regions with dense mutations.</p><p>Link: <a href="https://doi.org/10.1093/molbev/msaf077" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">doi.org/10.1093/molbev/msaf077</span><span class="invisible"></span></a></p><p><a href="https://ecoevo.social/tags/NewPaperAlert" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NewPaperAlert</span></a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://ecoevo.social/tags/variantcalling" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variantcalling</span></a> <a href="https://ecoevo.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a></p>
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#variantcalling
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nf-core<p>Pipeline release! nf-core/variantbenchmarking v1.0.0 - Innocent Pamuk</p><p>Please see the changelog: <a href="https://github.com/nf-core/variantbenchmarking/releases/tag/1.0.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/variantbenc</span><span class="invisible">hmarking/releases/tag/1.0.0</span></a></p><p><a href="https://mstdn.science/tags/benchmark" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>benchmark</span></a> <a href="https://mstdn.science/tags/draft" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>draft</span></a> <a href="https://mstdn.science/tags/structuralvariants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>structuralvariants</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
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