We just added a #reproducible example for large-scale #metabolomics data preprocessing using the @bioconductor #xcms package to @phili 's #Metabonaut tutorials resource!

https://rformassspectrometry.github.io/Metabonaut/articles/large-scale-analysis.html

runs also on a standard - thanks to the new memory-saving processing in #xcms

using the largest (n=4000) data set from MetaboLights

We are celebrating 10 years of #reproducible builds in #FDroid this year, and we are overhauling the way the build server works.

Thanks to the funding from #NLnet, #NGI #NGI0 part of #HorizonEurope, and your donations, our work is intended to power the future of #FDroid for the next ten and more.

Dig deeper for the why and the how in this 15 mins post: https://f-droid.org/2025/05/21/making-reproducible-builds-visible.html

This week in #FDroid (TWIF) is live:

* #Nextcloud store shenanigans
* #Cheogram in Space-s
* #DeltaChat and #ArcaneChat fork
* #FluffyChat feature full
* #Tachiyomi successor #Kahon
* #Inure #reproducible
* #PasswordStore fork
* #ReplicantOS and #NGI
* #NewPipe out of the 360p jail
+ 12 new apps
+ 195 updates

Go beyond clouds in https://f-droid.org/2025/05/15/twif.html

This week in #FDroid (TWIF) is live, a bit late:

* #reproducible status in website app details
* #Conversations_im & #Quicksy fix bugs
* Linwood Butterfly Adonis Blue
* #OSUOSL news
* #SECUSO updates many #PrivacyFriendlyApps
+ 1 new app
+ 112 updates

Check https://f-droid.org/2025/05/01/twif.html

Progress on securing our distribution against supply chain attacks: The Debian testing/trixie release on amd64 is now reproducible for over 95%, and counting. You can use the new debian-repro-status package to query the reproducibility status of your installed Debian packages. See https://reproduce.debian.net/ #debian #reproducible-builds

The Affordable DIY Mandeye Lidar System For Surveying Caves, And How To Convert 3D Clouds Into Traditional Cave Ground Plans And Extended Profiles
--
https://doi.org/10.5038/1827-806X.53.3.2535 <-- shared paper
--
#GIS #spatial #mapping #LiDAR #cave #cavediving #cavemapping #speleology #workflow #survey #remotesensing #pointcloud #mobilemapping #3Dmapping #profile #model #modeling #3dmodel #opensource #openhardware #reproducible #affordable #DIY #Mandeye

Reproducible Research: Make your work stand the test of time

If you ran your code in a year, would it still work?

In this session, we teach you how to make your research #reproducible — so your results can be trusted and built upon.

Join our workshop: https://coderefinery.github.io/2025-03-25-workshop/

This week I'm in #Montreal to present at #SANER2025 recent joint work with A. Gurioli and M. Gabrielli, on how to recognize AI-generated code. Key differences in our results wrt the state-of-the-art are: (1) a multilingual approach that supports 10 different programming languages, and (2) a fully #reproducible pipeline based on both #OpenWeight and #OpenData self-hosted LLMs. Talk info and #OpenAccess preprint at: https://conf.researchr.org/details/saner-2025/saner-2025-papers/36/Is-This-You-LLM-Recognizing-AI-written-Programs-with-Multilingual-Code-Stylometry

Using #FOSS apps is the first step, the next one is having those that are reproducibly built.

Is your keyboard #reproducible, verified or none? Find out in https://f-droid.org/2025/03/04/even-my-keyboard-is-built-reproducibly.html

Thank you @nixos_org for all your work for maintaining over 100.000 of #FreeSoftware packages and for your important contributions to #reproducible builds! #ilovefs

The #guix survey also showed that our users are knowledgeable #Linux people. Almost 50% are experts/advanced and 47% are intermediate!

A lot of the attraction is the #nix value of declarative configuration and reproducibility. Users also identified that Scheme, Guile and Lisp are cool! Perhaps the overlap of two different communities! That was my path from #clojure and #ubuntu /#debian

See Q1 in the post:

https://guix.gnu.org/en/blog/2025/guix-user-and-contributor-survey-2024-the-results-part-1/

New on the blog: Discover how we used #Nix and #NixOS to package a hybrid #CMake project with #Rust dependencies using Corrosion! Learn how to tackle dependency management challenges and build #reproducible systems.
Read here: https://cyberus-technology.de/en/articles/nix-cmake-corrosion #DevOps #FOSS

Celebrate #LoveDataWeek25 and join this light touch codereview workshop for people working in #DigitalHumanities.
14-02-25, on-site, free of charge
sign-up here:
https://www.universiteitleiden.nl/en/events/2025/02/codecheckatlucdh

Please get in touch if you would like to submit your work to be codechecked. Together with workshop participants, we'll make your materials as #reproducible as possible.

Teamwork with: @f_ostermann @nuest @sje

Thanks to @CDSLeiden and @universiteitleiden Center for Digital Humanities

@eScienceCenter

Looking forward to upcoming #sdsl2024 session by @loreabad6. Excellent #reproducible slides: https://github.com/loreabad6/post #SDSL #geocompx.

From a new study of reproducible science: "Make #code sharing a mandatory requirement for publishing articles using publicly available #data. Transitioning from an ideal to a tangible reality where #reproducible research is the norm is a necessity because only #OpenScience is good science."
https://www.thelancet.com/journals/lansea/article/PIIS2772-3682(24)00122-7/fulltext

#OpenCode #OpenData #OpenSource
@openscience

Things you should describe in your study if you need to process data with an #AI tool in order to make it #reproducible as much as possible according to @bortzmeyer :
- software used (easiest part)
- training set (hard to find, even for so-called "open source" LLM
- training parameters (weight...)
- hardware (GPU type and core number)
- durability (this LLM won't be available on huggingface forever, is there an alternative and more durable deposit somewhere?

Wanted to share that [Stageˣ] is now full source bootstrapped, 100% reproducible, signed by 2-3 independent reviewers/reproducers on every release, and can build itself.

It can be the base of reproducible build containers for most projects written in c, c++, nodejs, go, php, ocaml, rust, or zig.

I am thankful for the efforts of our team, and the patient advice and tireless debugging of people in the #reproducible-builds and #bootstrappable projects <3

https://codeberg.org/stagex/stagex

Very happy with this visualisation, not just because it's neatly presents results of our network simplification methods (which it does), but also because it was produced automatically in our workflow, which re-generates the results of our paper with every 'commit' to GitHub Watch this space for associated #reproducible paper with #RStats and #Python code

Please consider submitting a paper to the Topical Collection on Reproducible Research in Transportation for the European Transport Research Review. Deadline is December 31st 2024. Co-edited with Silvia Varotto, Cathy Wu, Christine Buisson, and zuduo zheng.
#research #reproducible #FAIR #transport

I'm currently working on a new npm package that will replace deltachat-node (which is still based on the cffi and NAPI).
The new npm package will make use of the #reproducible buildable deltachat-rpc-server binaries, which will make cross compiling much easier.

A nice side-effect to this is that the new npm packet is even somewhat compatible with #deno
Nice work on the part of Deno for their node compatibility!

Let me know If you would be interested in writing #deltachat #bots with #deno