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Frédéric Rimet<p>We have a post-doc position for 15 months in the framework of the <a href="https://dnaquaimg.eu/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">dnaquaimg.eu/</span><span class="invisible"></span></a> project (11 countries) at UMR Carrtel <a href="https://carrtel.lyon-grenoble.hub.inrae.fr/unit" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">carrtel.lyon-grenoble.hub.inra</span><span class="invisible">e.fr/unit</span></a> (Lake Geneva, France). <br>If you have good skills in molecular biology, aquatic ecology, biomonitoring, and if you want to join a good team working in a great place surrounded by mountains and lakes have a look to our job offer:<br><a href="https://jobs.inrae.fr/en/ot-27021" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">jobs.inrae.fr/en/ot-27021</span><span class="invisible"></span></a><br><a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://mastodon.social/tags/thonon" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>thonon</span></a> <a href="https://mastodon.social/tags/lake" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>lake</span></a> <a href="https://mastodon.social/tags/geneva" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>geneva</span></a> <a href="https://mastodon.social/tags/postdoc" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>postdoc</span></a> <a href="https://mastodon.social/tags/job" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>job</span></a></p>
Frédéric Rimet<p>Une offre de post-doc de 1 an renouvelable 1 an :<br>&gt; Finaliser le développement d’une méthode d’identification moléculaire du phytoplancton utilisant le séquençage ADN haut-débit <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a></p><p>&gt; CDD post-doc de 1 an, reconductible 1 an : démarrage à partir de mai 2025, Lieu : UMR Carrtel, Thonon <a href="https://fr-carrtel.lyon-grenoble.hub.inrae.fr/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">fr-carrtel.lyon-grenoble.hub.i</span><span class="invisible">nrae.fr/</span></a></p><p>&gt; Projet pluriannuel <a href="https://mastodon.social/tags/OFB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OFB</span></a> et le projet européen <a href="https://mastodon.social/tags/eDNAquaPlan" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNAquaPlan</span></a></p><p>&gt; candidature : frederic.rimet@inrae.fr</p><p>&gt; plus de détails : <a href="https://filesender.renater.fr/?s=download&amp;token=81a4c9dc-5e0f-49eb-a5bc-d83b53abb14d" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">filesender.renater.fr/?s=downl</span><span class="invisible">oad&amp;token=81a4c9dc-5e0f-49eb-a5bc-d83b53abb14d</span></a></p>
Warren Currie 🦠🦐<p>Weekend <a href="https://ecoevo.social/tags/Plankton" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Plankton</span></a> <a href="https://ecoevo.social/tags/Factoid" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Factoid</span></a> 🦐🦠<br>For <a href="https://ecoevo.social/tags/zooplankton" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>zooplankton</span></a>, there are few true rules about feeding. Herbivores will consume prey, and omnivores will consume anything they can handle - live or dead. <a href="https://ecoevo.social/tags/Jellyfish" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Jellyfish</span></a> are often viewed as poor food, rarely consumed, so "jellyfication" of the oceans was thought a concern. While <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> has its issues, it makes possible identification of trace prey, and <a href="https://ecoevo.social/tags/Arctic" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Arctic</span></a> amphipods are confirmed to eat gelatinous zooplankton esp if food is scarce.<br><a href="https://phys.org/news/2024-02-tiny-crustaceans-preying-jellyfish-harsh.amp" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">phys.org/news/2024-02-tiny-cru</span><span class="invisible">staceans-preying-jellyfish-harsh.amp</span></a></p>
Jim Downie<p>Can anyone recommend any methods (statistical or otherwise) for dealing with tag jumping in amplicon sequencing data? Seems to be a big problem in my current dataset (combinatorial indexing, Illumina), but I'm not sure what a practical approach to correcting it might be (given that I can't go back now and change the library prep!). <a href="https://mstdn.science/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://mstdn.science/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNA</span></a></p>
Teresita Porter 🙋🏻‍♀️<p>**eDNA Metabarcoding Data in the Global Biodiversity Information Facility (GBIF)**</p><p><a href="https://biss.pensoft.net/article/110672/" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">biss.pensoft.net/article/11067</span><span class="invisible">2/</span></a></p><p><a href="https://ecoevo.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNA</span></a> <a href="https://ecoevo.social/tags/environmentalDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>environmentalDNA</span></a> <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://ecoevo.social/tags/biodiversity" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biodiversity</span></a> <a href="https://ecoevo.social/tags/GBIF" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GBIF</span></a> <a href="https://ecoevo.social/tags/dataReuse" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dataReuse</span></a> <a href="https://ecoevo.social/tags/standardization" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>standardization</span></a> <a href="https://ecoevo.social/tags/FAIRdata" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>FAIRdata</span></a></p>
Teresita Porter 🙋🏻‍♀️<p>Looking for a new remote-work opportunity, please forward if you know anyone who may be hiring someone with my skillset. TIA!</p><p>Molecular ecologist. Full cycle experience: field, lab, analysis, publication. Complex multi-trophic community analyses from bulk soil, water, mixed macroinverts. Freshwater ecology. Mycology.<br><a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://ecoevo.social/tags/EnvironmentalGenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>EnvironmentalGenomics</span></a> <a href="https://ecoevo.social/tags/Phylogenetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Phylogenetics</span></a> <a href="https://ecoevo.social/tags/Phylogenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Phylogenomics</span></a> </p><p>Bioinformatician. Strong data analysis skills. <a href="https://ecoevo.social/tags/Linux" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Linux</span></a> <a href="https://ecoevo.social/tags/pipelines" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>pipelines</span></a> <a href="https://ecoevo.social/tags/db" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>db</span></a> <a href="https://ecoevo.social/tags/HPC" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>HPC</span></a> <a href="https://ecoevo.social/tags/HTS" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>HTS</span></a> <a href="https://ecoevo.social/tags/Python" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Python</span></a> <a href="https://ecoevo.social/tags/R" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>R</span></a> <a href="https://ecoevo.social/tags/Perl" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Perl</span></a></p>
Physalia-courses<p>🧐There are still a few seats available for some of our courses in April!</p><p>www.physalia-courses.org</p><p><a href="https://mas.to/tags/Rstats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Rstats</span></a> <a href="https://mas.to/tags/Binformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Binformatics</span></a> <a href="https://mas.to/tags/rspatial" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>rspatial</span></a> <a href="https://mas.to/tags/Pangenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Pangenomics</span></a> <a href="https://mas.to/tags/GeometricMorphometrics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GeometricMorphometrics</span></a> <a href="https://mas.to/tags/Metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Metagenomics</span></a> <a href="https://mas.to/tags/MultivariateAnalysis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MultivariateAnalysis</span></a> <a href="https://mas.to/tags/Metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Metabarcoding</span></a> <a href="https://mas.to/tags/Genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genomics</span></a></p>
Professor Mark Osborn<p>Worth a read...</p><p>Superb study in eLife exploring changes in diversity and community structure of <a href="https://aus.social/tags/arthropods" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>arthropods</span></a> in German forests via <a href="https://aus.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a> analysis of environmental DNA (<a href="https://aus.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNA</span></a>) from archived leaf material across three decades.</p><p><a href="https://elifesciences.org/articles/78521" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">elifesciences.org/articles/785</span><span class="invisible">21</span></a></p><p>This methodology opens up opportunities for exploring changes in biodiversity in other archived environmental samples including to explore responses to <a href="https://aus.social/tags/climatechange" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>climatechange</span></a> and <a href="https://aus.social/tags/pollution" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>pollution</span></a> impacts</p><p><a href="https://aus.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://aus.social/tags/ecology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ecology</span></a> <a href="https://aus.social/tags/biodiversity" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biodiversity</span></a> <a href="https://aus.social/tags/monitoring" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>monitoring</span></a></p>
SeMMAP<p>Anyone else enjoy a good <a href="https://vis.social/tags/RibbonChart" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RibbonChart</span></a> ? </p><p>Here's one available on our dashboard aka The Indicator Panel. It's great for comparisons of data spatially and temporally. Seen here it helps us compare duplicate <a href="https://vis.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNA</span></a> samples taken near Lassen Volcanic <a href="https://vis.social/tags/NationalPark" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NationalPark</span></a></p><p><a href="https://experience.arcgis.com/experience/db3a30220d0d4bdea684781cdaef5230/page/Indicator-Panel-/" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">experience.arcgis.com/experien</span><span class="invisible">ce/db3a30220d0d4bdea684781cdaef5230/page/Indicator-Panel-/</span></a></p><p><a href="https://vis.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://vis.social/tags/EnvironmentalDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>EnvironmentalDNA</span></a> <a href="https://vis.social/tags/DataViz" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DataViz</span></a> <a href="https://vis.social/tags/PowerBI" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PowerBI</span></a> <a href="https://vis.social/tags/ScienceMastodon" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ScienceMastodon</span></a></p>
Ingeborg Klarenberg<p>Quick <a href="https://mastodon.green/tags/introduction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>introduction</span></a>. </p><p>I am a <a href="https://mastodon.green/tags/terrestrial" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>terrestrial</span></a> <a href="https://mastodon.green/tags/ecologist" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ecologist</span></a> 👩‍🔬 interested in <a href="https://mastodon.green/tags/polar" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>polar</span></a> ❄️ <a href="https://mastodon.green/tags/ecosystems" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ecosystems</span></a>. Currently <a href="https://mastodon.green/tags/postdoc" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>postdoc</span></a> at <a href="https://mastodon.green/tags/VUAmsterdam" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>VUAmsterdam</span></a> working on <a href="https://mastodon.green/tags/Antarctic" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Antarctic</span></a> 🇦🇶 <a href="https://mastodon.green/tags/microbes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>microbes</span></a> 🦠 and <a href="https://mastodon.green/tags/invertebrates" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>invertebrates</span></a> 🐜 living in <a href="https://mastodon.green/tags/mosses" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>mosses</span></a> and <a href="https://mastodon.green/tags/lichens" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>lichens</span></a>. </p><p>When not doing <a href="https://mastodon.green/tags/science" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>science</span></a>, I take photos 🎞️ (ingeborgklarenberg.nl), and spend as much time as possible outside <a href="https://mastodon.green/tags/running" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>running</span></a> 🏃‍♀️, <a href="https://mastodon.green/tags/climbing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>climbing</span></a> 🧗‍♀️, hiking and bird watching.</p><p><a href="https://mastodon.green/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNA</span></a> <a href="https://mastodon.green/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://mastodon.green/tags/nitrogenfixation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nitrogenfixation</span></a> <a href="https://mastodon.green/tags/molecularecology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>molecularecology</span></a> <br><a href="https://mastodon.green/tags/symbiosis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>symbiosis</span></a></p>
Prof Beth Clare<p><a href="https://ecoevo.social/tags/introduction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>introduction</span></a> Just migrated over from mastodon.social, Starting again.... Professor I work in <a href="https://ecoevo.social/tags/MolecularEcology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MolecularEcology</span></a> and <a href="https://ecoevo.social/tags/conservation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>conservation</span></a>. My lab specialises in <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a>, and <a href="https://ecoevo.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNA</span></a>, to study wildlife, particularly <a href="https://ecoevo.social/tags/bats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bats</span></a> but interested in it all. Worked all over the world, developed new technology. Among the first to use <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> to study diet, the first to extract vertebrate <a href="https://ecoevo.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNA</span></a> from the air. I love taking photographs. Trying this mastodon thing…. We shall see…</p>
Daniel Vaulot<p>The R pr2database package that contains taxonomically annotated 18S rRNA sequences is now available on r-universe</p><p><a href="https://genomic.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://genomic.social/tags/18S" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>18S</span></a> <a href="https://genomic.social/tags/protists" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>protists</span></a> <a href="https://genomic.social/tags/rstats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>rstats</span></a></p><p><a href="https://pr2database.r-universe.dev/ui#package:pr2database" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">pr2database.r-universe.dev/ui#</span><span class="invisible">package:pr2database</span></a></p>
Daniel Vaulot<p># Introduction<br>From the Roscoff Biological Station (<a href="https://genomic.social/tags/CNRS" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CNRS</span></a> and <a href="https://genomic.social/tags/Sorbonne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Sorbonne</span></a> University) as well as visiting prof at NTU Singapore. Developing reference databases for <a href="https://genomic.social/tags/eukaryote" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eukaryote</span></a> <a href="https://genomic.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> (18S rRNA).<br><a href="https://genomic.social/tags/microbiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>microbiology</span></a> <a href="https://genomic.social/tags/ecology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ecology</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a> <br><a href="https://pr2-database.org/" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="">pr2-database.org/</span><span class="invisible"></span></a></p>