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Molecular Biology & Evolution<p>Yaddehige et al. present GBRAP, a parser and database for analyzing RefSeq genomes. This publicly available tool offers over 200 metrics per genome element with flexible retrieval, visualization, and export options.</p><p>🔗 doi.org/10.1093/molbev/msaf114</p><p><a href="https://ecoevo.social/tags/evolbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>evolbio</span></a> <a href="https://ecoevo.social/tags/molbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>molbio</span></a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
Molecular Biology & Evolution<p>SatuTe by Manuel et al. is a new tool to quantify phylogenetic signal and saturation between subtrees. Applied to the Tree of Life, SatuTe shows that most ribosomal proteins support a eukaryotic clade.</p><p>🔗 doi.org/10.1093/molbev/msaf090</p><p><a href="https://ecoevo.social/tags/evolbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>evolbio</span></a> <a href="https://ecoevo.social/tags/phylogenetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>phylogenetics</span></a> <a href="https://ecoevo.social/tags/compbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>compbio</span></a></p>
Molecular Biology & Evolution<p>Policarpo et al. use phylogenetic and synteny data to identify 19 teleost-to-teleost horizontal gene transfers in 11 orders, involving genes linked to immunity or pore formation; this suggests eukaryote-to-eukaryote HGT has shaped teleost evolution.</p><p>🔗 doi.org/10.1093/molbev/msaf107</p><p><a href="https://ecoevo.social/tags/evolbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>evolbio</span></a> <a href="https://ecoevo.social/tags/molbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>molbio</span></a> <a href="https://ecoevo.social/tags/fish" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>fish</span></a></p>
Molecular Biology & Evolution<p>In Artemia franciscana, sex-biased gene expression and dosage compensation on the Z chromosome are linked to chromatin state. H4K16ac histone mark enrichment in female-limited Z chr. suggests a role in dosage compensation. New paper by Bett el al in MBE:</p><p>🔗 <a href="https://doi.org/10.1093/molbev/msaf085" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">doi.org/10.1093/molbev/msaf085</span><span class="invisible"></span></a></p><p><a href="https://ecoevo.social/tags/evolbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>evolbio</span></a> <a href="https://ecoevo.social/tags/molbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>molbio</span></a></p>
Molecular Biology & Evolution<p>Lau et al. show that bioluminescent luciferases in brittle stars and octocorals evolved in parallel from haloalkane dehalogenases, highlighting how gene function and genomic availability shape convergent evolution.</p><p>🔗 <a href="https://doi.org/10.1093/molbev/msaf081" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">doi.org/10.1093/molbev/msaf081</span><span class="invisible"></span></a></p><p><a href="https://ecoevo.social/tags/evolbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>evolbio</span></a> <a href="https://ecoevo.social/tags/molbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>molbio</span></a></p>