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Jérôme Goudet<p>A new paper lead by the excellent Eleonore Lavanchy, about the lack of purging in European barn owls: </p><p><a href="https://www.nature.com/articles/s41437-024-00728-8" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">nature.com/articles/s41437-024</span><span class="invisible">-00728-8</span></a></p><p><a href="https://ecoevo.social/tags/DEE" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DEE</span></a> <br><a href="https://ecoevo.social/tags/FBM" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>FBM</span></a> <br><a href="https://ecoevo.social/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a> <br><a href="https://ecoevo.social/tags/UNIL" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UNIL</span></a></p>
CarKettner<p><span class="h-card" translate="no"><a href="https://mastodon.social/@brembs" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>brembs</span></a></span> <span class="h-card" translate="no"><a href="https://mastodon.social/@resdatall" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>resdatall</span></a></span> True, and that's another reason to become more independet from US-based ressources. We have good starting points at <a href="https://toot.kif.rocks/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a> and <a href="https://toot.kif.rocks/tags/EMBL" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>EMBL</span></a>-EBI but European funding bodies need to get used to support data repositories on a long term.</p>
maexchen1<p>Kein Wunder, schon mal angeguckt was die <a href="https://nrw.social/tags/Autos" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Autos</span></a>, für im Schnitt 25km am Tag alles an teurem <a href="https://nrw.social/tags/SchnickSchnack" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SchnickSchnack</span></a> <br>haben? </p><p>Währenddessen fahren in <a href="https://nrw.social/tags/china" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>china</span></a> <a href="https://nrw.social/tags/Elektroautos" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Elektroautos</span></a> rum die keine 15000 € kosten und sogar <a href="https://nrw.social/tags/Natrium" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Natrium</span></a> Batterien haben = <a href="https://nrw.social/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a></p><p>Wenn es <a href="https://nrw.social/tags/EAutos" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>EAutos</span></a> in der Polo3 oder Golf3 Klasse gibt, werde ich mir auch eins holen.</p><p>An der jetzigen Materialverschwendung beteilige ich mich jedenfalls nicht.</p><p><a href="https://nrw.social/tags/Elektroauto" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Elektroauto</span></a> Förderung gestoppt<br>- Absatz ohnehin schwach </p><p><a href="https://www.ndr.de/nachrichten/ndrdata/Elektroauto-Foerderung-gestoppt-Absatz-ohnehin-schwach,eautos154.html" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">ndr.de/nachrichten/ndrdata/Ele</span><span class="invisible">ktroauto-Foerderung-gestoppt-Absatz-ohnehin-schwach,eautos154.html</span></a> </p><p><a href="https://nrw.social/tags/verkehrswende" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>verkehrswende</span></a></p>
Marc Robinson-Rechavi<p><a href="https://ecoevo.social/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a> course:<br>"<a href="https://ecoevo.social/tags/Biodiversity" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Biodiversity</span></a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a>: from large-scale <a href="https://ecoevo.social/tags/phylogenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>phylogenomics</span></a> to gene families and functions"<br>30.08-1.09 Lausanne <a href="https://ecoevo.social/tags/UNIL" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UNIL</span></a>. <br>- key evolutionary concepts<br>- methodological approaches<br>- hands-on in comparative genomic analyses, protein-coding gene evolution and function across animal genomes, from model and non model species; using e.g. <a href="https://ecoevo.social/tags/OrthoDB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OrthoDB</span></a>, <a href="https://ecoevo.social/tags/BUSCO" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BUSCO</span></a>, <a href="https://ecoevo.social/tags/OMA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OMA</span></a> <span class="h-card"><a href="https://genomic.social/@bgeedb" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>bgeedb</span></a></span> <br>Trainers: <span class="h-card"><a href="https://ecoevo.social/@rmwaterhouse" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>rmwaterhouse</span></a></span>, N Glover, C Dessimoz, &amp; me <a href="https://www.sib.swiss/training/course/20230830_COMGE" rel="nofollow noopener" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">sib.swiss/training/course/2023</span><span class="invisible">0830_COMGE</span></a> <a href="https://ecoevo.social/tags/MolecularEvolution" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MolecularEvolution</span></a> <a href="https://ecoevo.social/tags/Genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genomics</span></a> <a href="https://ecoevo.social/tags/training" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>training</span></a></p>
Michael Baudis<p><span class="h-card"><a href="https://mastodon.social/@brembs" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>brembs</span></a></span> Good point. Now, how do I get it over to <a href="https://genomic.social/tags/UZH" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UZH</span></a> and <a href="https://genomic.social/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a> etc., and subsidiaries, when they’re not here?</p>
Marc Robinson-Rechavi<p>Announcing <a href="https://ecoevo.social/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a> Comparative genomics course, taught by Christophe Dessimoz, Natasha Glover, <span class="h-card"><a href="https://ecoevo.social/@rmwaterhouse" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>rmwaterhouse</span></a></span> and myself, 30 August - 01 September in Lausanne <a href="https://ecoevo.social/tags/UNIL" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UNIL</span></a> <br>• Introduction to molecular evolution &amp; phylogenetics<br>• Orthology-focused arthropod comparative genomics<br>• Duplication of genes and genomes, expression<br>with <a href="https://ecoevo.social/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a> resources <a href="https://ecoevo.social/tags/OMA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OMA</span></a>, <a href="https://ecoevo.social/tags/Orthodb" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Orthodb</span></a> <a href="https://ecoevo.social/tags/BUSCO" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BUSCO</span></a> and <span class="h-card"><a href="https://genomic.social/@bgeedb" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>bgeedb</span></a></span> <a href="https://ecoevo.social/tags/ortholog" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ortholog</span></a> <a href="https://ecoevo.social/tags/orthologs" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>orthologs</span></a> <a href="https://ecoevo.social/tags/paralog" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>paralog</span></a> <a href="https://ecoevo.social/tags/duplication" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>duplication</span></a> <a href="https://ecoevo.social/tags/MolecularEvolution" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MolecularEvolution</span></a> <a href="https://ecoevo.social/tags/Genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genomics</span></a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://ecoevo.social/tags/training" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>training</span></a> <span class="h-card"><a href="https://mastodon.social/@P_Palagi" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>P_Palagi</span></a></span> <a href="https://www.sib.swiss/training/course/20230830_COMGE" rel="nofollow noopener" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">sib.swiss/training/course/2023</span><span class="invisible">0830_COMGE</span></a></p>
Bgee database<p><a href="https://genomic.social/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a> Preprint on the power and limitations of <a href="https://genomic.social/tags/AI" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AI</span></a> <a href="https://genomic.social/tags/chatbots" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>chatbots</span></a> such as <a href="https://genomic.social/tags/chatgpt" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>chatgpt</span></a> to understand <a href="https://genomic.social/tags/SPARQL" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SPARQL</span></a> federated queries over <a href="https://genomic.social/tags/UniProt" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UniProt</span></a>, <a href="https://genomic.social/tags/OMA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OMA</span></a> and <a href="https://genomic.social/tags/Bgee" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bgee</span></a> <a href="https://arxiv.org/abs/2304.10427" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">arxiv.org/abs/2304.10427</span><span class="invisible"></span></a></p>
Marc Robinson-Rechavi<p>We are recruiting a <a href="https://ecoevo.social/tags/postdoc" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>postdoc</span></a> to work on the <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> / <a href="https://ecoevo.social/tags/biostatistics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biostatistics</span></a> of new types of <a href="https://ecoevo.social/tags/GeneExpression" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GeneExpression</span></a> data in <span class="h-card"><a href="https://genomic.social/@bgeedb" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>bgeedb</span></a></span>: new <a href="https://ecoevo.social/tags/SingleCell" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SingleCell</span></a>, isoform-specific <a href="https://ecoevo.social/tags/RNAseq" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RNAseq</span></a>, etc. We integrate all data types into summary scores and calls of expression, so there are a lot of challenges in integrating each new data type. And a lot of opportunities both for methodological research, and for downstream biology using these newly integrated data. <a href="https://ecoevo.social/tags/academicjobs" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>academicjobs</span></a> <span class="h-card"><a href="https://ecoevo.social/@dee_unil" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>dee_unil</span></a></span> <a href="https://ecoevo.social/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a> <a href="https://bit.ly/3G7DUGD" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="">bit.ly/3G7DUGD</span><span class="invisible"></span></a></p>
Marc Robinson-Rechavi<p><a href="https://ecoevo.social/tags/Matreex" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Matreex</span></a> is available at <a href="https://github.com/DessimozLab/matreex" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="">github.com/DessimozLab/matreex</span><span class="invisible"></span></a> <a href="https://ecoevo.social/tags/opensource" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>opensource</span></a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://ecoevo.social/tags/phylogenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>phylogenomics</span></a> <a href="https://ecoevo.social/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a></p>
Marc Robinson-Rechavi<p>New preprint, by Victor Rossier with the group of Christophe Dessimoz (<a href="https://ecoevo.social/tags/UNIL" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UNIL</span></a> and <a href="https://ecoevo.social/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a>), introducing <a href="https://ecoevo.social/tags/Matreex" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Matreex</span></a>, a new dynamic tool to scale-up the visualisation of gene families, and its application to showing loss of intraflagellar transport in a myxozoan<br><a href="https://www.biorxiv.org/content/10.1101/2023.02.18.529053v1" rel="nofollow noopener" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">biorxiv.org/content/10.1101/20</span><span class="invisible">23.02.18.529053v1</span></a><br><a href="https://ecoevo.social/tags/phylogeny" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>phylogeny</span></a> <a href="https://ecoevo.social/tags/phylogenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>phylogenomics</span></a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://ecoevo.social/tags/BigData" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BigData</span></a> <a href="https://ecoevo.social/tags/visualization" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>visualization</span></a> <a href="https://ecoevo.social/tags/vizbi" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>vizbi</span></a> <a href="https://ecoevo.social/tags/myxozoan" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>myxozoan</span></a> <span class="h-card"><a href="https://ecoevo.social/@dee_unil" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>dee_unil</span></a></span> <br>1/thread</p>
Marc Robinson-Rechavi<p>We are recruiting a <a href="https://ecoevo.social/tags/biocurator" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biocurator</span></a> to work on <a href="https://ecoevo.social/tags/SingleCell" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SingleCell</span></a> data, metadata, and analysis standards. It's an exciting new project between <span class="h-card"><a href="https://genomic.social/@bgeedb" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>bgeedb</span></a></span> and <a href="https://ecoevo.social/tags/ASAP" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ASAP</span></a> at <a href="https://ecoevo.social/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a> <a href="https://ecoevo.social/tags/UNIL" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UNIL</span></a> and <a href="https://ecoevo.social/tags/EPFL" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>EPFL</span></a>. Join us in beautiful <a href="https://ecoevo.social/tags/Lausanne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Lausanne</span></a> 🇨🇭 to contribute to <a href="https://ecoevo.social/tags/FAIR" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>FAIR</span></a> data and knowledge about single-cell biology. <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://ecoevo.social/tags/biocuration" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biocuration</span></a> <br><a href="https://bit.ly/3XIcRsp" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="">bit.ly/3XIcRsp</span><span class="invisible"></span></a></p>
Bgee database<p>Hi this is the account of the Bgee database of gene expression maintained by the lab of <span class="h-card"><a href="https://ecoevo.social/@marcrr" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>marcrr</span></a></span> &amp; Frederic Bastian at Swiss Institute of Bioinformatics <a href="https://genomic.social/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a> and University of Lausanne <a href="https://genomic.social/tags/UNIL" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UNIL</span></a>: <a href="https://bgee.org/" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="">bgee.org/</span><span class="invisible"></span></a></p>
Bifilarcoil<p>Not sure how to read this:</p><p><a href="https://dailycaller.com/2019/12/13/melania-trump-barron-greta-thunberg/" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">dailycaller.com/2019/12/13/mel</span><span class="invisible">ania-trump-barron-greta-thunberg/</span></a></p><p>Barron <a href="https://mas.to/tags/Trump" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Trump</span></a> needs and deservers <a href="https://mas.to/tags/privacy" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>privacy</span></a>.</p><p>SURE, WE ALL DO! Don't we? Does Barron deserve more privacy then 'the rest of the childeren on planet earth that are being spied on 24/7 by the <a href="https://mas.to/tags/NSA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NSA</span></a> <a href="https://mas.to/tags/GCHQ" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GCHQ</span></a> <a href="https://mas.to/tags/BND" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BND</span></a> <a href="https://mas.to/tags/AIVD" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AIVD</span></a> <a href="https://mas.to/tags/VSSE" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>VSSE</span></a> <a href="https://mas.to/tags/CSIS" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CSIS</span></a> <a href="https://mas.to/tags/PET" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PET</span></a> <a href="https://mas.to/tags/NDB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NDB</span></a> <a href="https://mas.to/tags/GRLS" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GRLS</span></a> <a href="https://mas.to/tags/DGSI" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DGSI</span></a> <a href="https://mas.to/tags/AISE" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AISE</span></a> <a href="https://mas.to/tags/CIRO" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CIRO</span></a> <a href="https://mas.to/tags/ASIS" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ASIS</span></a> <a href="https://mas.to/tags/MUST" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MUST</span></a> <a href="https://mas.to/tags/NZSIS" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NZSIS</span></a> <a href="https://mas.to/tags/SIRP" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIRP</span></a> <a href="https://mas.to/tags/FSB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>FSB</span></a> <a href="https://mas.to/tags/BMLV" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BMLV</span></a> <a href="https://mas.to/tags/SIB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SIB</span></a> <a href="https://mas.to/tags/Mossad" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Mossad</span></a> <a href="https://mas.to/tags/Supo" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Supo</span></a>' and aaaaall the other bullshit agencies we have on this planet? </p><p>Every single person on the planet has the same need for privacy.</p>